Gsnap Jun 2026

For researchers studying RNA-Seq, GSNAP is a "splice-aware" aligner. It can detect:

is a short-read aligner developed by Thomas D. Wu and Serban Nacu at the J. Craig Venter Institute. It is part of the gmap package. GSNAP is designed to align DNA and RNA sequencing reads to a reference genome. For researchers studying RNA-Seq, GSNAP is a "splice-aware"